Publications


PEPPRO: Quality control and processing of nascent RNA profiling data. Genome Biology, Smith JP, Dutta AB, Sathyan KM, Guertin MJ*, Sheffield NC* 22: 155, 2021. PDF


Defining data-driven primary transcript annotations with primaryTranscriptAnnotation in R. Bioinformatics, Anderson WD, Duarte FM, Civelek M, Guertin MJ 36(9):2926-2928, 2020. PDF


Comparative interactomes of HSF1 in stress and disease reveal a role for CTCF in HSF1-mediated gene regulation. Journal of Biological Chemistry, Burchfiel ET, Vihervaara A, Guertin MJ, Gomez-Pastor R, Thiele DJ, 296:100097, 2020. PDF


ARF-AID: A Rapidly Inducible Protein Degradation System That Preserves Basal Endogenous Protein Levels. Current Protocols in Molecular Biology, Sathyan KM, Scott TG, Guertin MJ, 132(1):e124, 2020. PDF


An improved auxin-inducible degron system preserves native protein levels and enables rapid and specific protein depletion. Genes and Development, Sathyan KM, McKenna BD, Anderson WD, Duarte FM, Core L, Guertin MJ. 33(19-20):1441-1455. 2019. PDF


Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq. Nucleic Acids Research, Guertin MJ, Cullen AE, Markowetz F, Holding AN. 46(12):e75. 2018. PDF


Universal correction of enzymatic sequence bias reveals molecular signatures of protein/DNA interactions. Nucleic Acids Research, Martins AL, Walavalkar NM, Anderson WD, Zang C, Guertin MJ. 46(2):e9. 2018. PDF


BART: a transcription factor prediction tool with query gene sets or epigenomic profiles. Wang Z, Civelek M, Miller CL, Sheffield NC, Guertin MJ, Zang C. Bioinformatics. 34(16):2867-2869, 2018. PDF


Genetic and epigenetic determinants establish a continuum of Hsf1 occupancy and activity across the yeast genome.Pincus D, Anandhakumar J, Thiru P, Guertin MJ, Erkine AM, Gross DS. Mol Biol Cell. 29(26):3168-3182, 2018. PDF


Identification of Drivers of Aneuploidy in Breast Tumors. Pfister K, Pipka JL, Chiang C, Liu Y, Clark RA, Keller R, Skoglund P, Guertin MJ, Hall IM, Stukenberg PT. Cell Reports. 23(9):2758-2769, 2018. PDF


Identification of breast cancer associated variants that modulate transcription factor binding. Liu Y, Walavalkar NM, Dozmorov MG, Rich SS, Civelek M, Guertin MJ. PLoS Genetics. 13(9):e1006761, 2017. PDF


Up For A Challenge (U4C): Stimulating innovation in breast cancer genetic epidemiology. Mechanic LE, Lindström S, et. al, U4C Challenge Participants, U4C Challenge Data Contributors, Gillanders EM. PLoS Genetics. 13(9):e1006945, 2017. PDF


Transcriptional response to stress is pre-wired by promoter and enhancer architecture. Vihervaara A, Mahat DB, Guertin MJ, Chu T, Danko CG, Lis JT, Sistonen L. Nature Communications. 8(1):255. 2017. PDF


Mechanisms by which transcription factors gain access to target sequence elements in chromatin. Curr Opin Genet Dev, Guertin MJ, Lis JT. 23(2):116-23. 2013. PDF


The website is currently being updated as the Guertin Lab settles in at UConn Health. All publications will be uploaded soon as PDF links. For now, you can access all publications through Google Scholar.