ANKLE1 cleaves mitochondrial DNA and contributes to cancer risk by promoting apoptosis resistance and metabolic dysregulation. Communications Biology, Przanowski P, Przanowska RK, Guertin MJ 6: 231, 2023. PDF

Kinetic networks identify TWIST2 as a key regulatory node in adipogenesis. Genome Research, Dutta AB, Lank DS, Przanowska RK, Przanowski P, Wang L, Nguyen B, Walavalkar NM, Duarte FM, Guertin MJ 33: 314-331, 2023. PDF

Correction of transposase sequence bias in ATAC-seq data with rule ensemble modeling. NAR Genom Bioinform, Wolpe JB, Martins AL, Guertin MJ accepted 2023. PDF

Processing and evaluating the quality of genome-wide nascent transcription profiling libraries. bioRχiv, Scott TG, Martins AL, Guertin MJ 2022.12.14.520463, 2022. PDF

Distinct MUNC lncRNA structural domains regulate transcription of different promyogenic factors. Cell Reports, Przanowska RK, Weidmann CA, Saha S, Cichewicz MA, Jensen KN, Przanowski P, Irving PS, Janes KA, Guertin MJ, Weeks KM, Dutta A. 38:110361, 2022. PDF

Intrinsic bias estimation for improved analysis of bulk and single-cell chromatin accessibility profiles using SELMA. Nature Communications, Shengen SH, Liu L, Li Q, Ma W, Guertin MJ, Meyer CA, Dang K, Zhang T, Zang C. 13:5533, 2022. PDF

PEPPRO: Quality control and processing of nascent RNA profiling data. Genome Biology, Smith JP, Dutta AB, Sathyan KM, Guertin MJ*, Sheffield NC* 22: 155, 2021. PDF

Comparative interactomes of HSF1 in stress and disease reveal a role for CTCF in HSF1-mediated gene regulation. Journal of Biological Chemistry, Burchfiel ET, Vihervaara A, Guertin MJ, Gomez-Pastor R, Thiele DJ, 296:100097, 2021. PDF

Defining data-driven primary transcript annotations with primaryTranscriptAnnotation in R. Bioinformatics, Anderson WD, Duarte FM, Civelek M, Guertin MJ 36(9):2926-2928, 2020. PDF

ARF-AID: A Rapidly Inducible Protein Degradation System That Preserves Basal Endogenous Protein Levels. Current Protocols in Molecular Biology, Sathyan KM, Scott TG, Guertin MJ, 132(1):e124, 2020. PDF

An improved auxin-inducible degron system preserves native protein levels and enables rapid and specific protein depletion. Genes and Development, Sathyan KM, McKenna BD, Anderson WD, Duarte FM, Core L, Guertin MJ. 33(19-20):1441-1455. 2019. PDF

Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq. Nucleic Acids Research, Guertin MJ, Cullen AE, Markowetz F, Holding AN. 46(12):e75. 2018. PDF

Universal correction of enzymatic sequence bias reveals molecular signatures of protein/DNA interactions. Nucleic Acids Research, Martins AL, Walavalkar NM, Anderson WD, Zang C, Guertin MJ. 46(2):e9. 2018. PDF

BART: a transcription factor prediction tool with query gene sets or epigenomic profiles. Wang Z, Civelek M, Miller CL, Sheffield NC, Guertin MJ, Zang C. Bioinformatics. 34(16):2867-2869, 2018. PDF

Genetic and epigenetic determinants establish a continuum of Hsf1 occupancy and activity across the yeast genome.Pincus D, Anandhakumar J, Thiru P, Guertin MJ, Erkine AM, Gross DS. Mol Biol Cell. 29(26):3168-3182, 2018. PDF

Identification of Drivers of Aneuploidy in Breast Tumors. Pfister K, Pipka JL, Chiang C, Liu Y, Clark RA, Keller R, Skoglund P, Guertin MJ, Hall IM, Stukenberg PT. Cell Reports. 23(9):2758-2769, 2018. PDF

Identification of breast cancer associated variants that modulate transcription factor binding. Liu Y, Walavalkar NM, Dozmorov MG, Rich SS, Civelek M, Guertin MJ. PLoS Genetics. 13(9):e1006761, 2017. PDF

Up For A Challenge (U4C): Stimulating innovation in breast cancer genetic epidemiology. Mechanic LE, Lindström S, et. al, U4C Challenge Participants, U4C Challenge Data Contributors, Gillanders EM. PLoS Genetics. 13(9):e1006945, 2017. PDF

Transcriptional response to stress is pre-wired by promoter and enhancer architecture. Vihervaara A, Mahat DB, Guertin MJ, Chu T, Danko CG, Lis JT, Sistonen L. Nature Communications. 8(1):255. 2017. PDF

Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation. Duarte FM, Fuda NJ, Mahat DB, Core LJ, Guertin MJ*, Lis JT*, Genes and Development. 30:1731–1746. 2016. PDF

Mechanisms by which transcription factors gain access to target sequence elements in chromatin. Curr Opin Genet Dev, Guertin MJ, Lis JT. 23(2):116-23. 2013. PDF

All other publications are freely accessible through the publishers and a comprehensive list is found on Google Scholar.